Updated publication list can be found in GOOGLE SCHOLAR and PUBMED
* Corresponding Author Publications; # Equal Contribution
Web of Science ResearcherID: H-5459-2019
ORCiD: 0000-0003-3189-8995
Google Scholar: https://scholar.google.co.in/citations?user=cRpswPEAAAAJ&hl=en
Google Scholar Citations: 7070; h-index: 34; i10 index: 48
Research articles
- Singh S, Das A, Sahoo G, & Panda AC*. Circular RNA Pde4dip regulates myogenesis by interacting with Zfp143 mRNA: a novel regulatory axis. RNA Biology, 2025: 22:1, 1-11
- Romero B, Hoque P, Robinson KG, Lee SK, Sinha T, Panda A, Shrader MW, Parashar V, Akins RE, and Batish M. The circular RNA circNFIX regulates MEF2C expression in muscle satellite cells in spastic cerebral palsy. Journal of Biological Chemistry, 2024: p. 107987.
- Das P, Shyamal S, Prahaladan VM, Mishra SS, Takada X, Chandran S, Addya S, Agarwal B, Andersson S, Panda AC*, Bhandari V*. A novel circRNA–miRNA–mRNA regulatory axis as a sex-specific biological variable in bronchopulmonary dysplasia. NAR Molecular Medicine, 1(4); ugae014.
- Samal S, Barik D, Shyamal S, Jena S, Panda AC, and Dash M. Synergistic Interaction between Polysaccharide-Based Extracellular Matrix and Mineralized Osteoblast-Derived EVs Promotes Bone Regeneration via miRNA-mRNA Regulatory Axis. Biomacromolecules. 2024 25 (7), 4139-4155
- Singh S, Shyamal S, Das A, Panda AC*. Global identification of mRNA-interacting circular RNAs by CLiPPR-Seq. Nucleic Acids Research, 2024, gkae058.
- Das A, Sinha T, Mishra SS, Das D, Panda AC*. Identification of potential proteins translated from circular RNA splice variants. Eur J Cell Biol. 2023, 102(1):151286.
- Das A, Das D, Das A, Panda AC*. A quick and cost-effective method for DNA-free total RNA isolation using magnetic silica beads. Wellcome Open Res. 2023, 8:137.
- Das A, Das D, Panda AC*. Quantification of Circular RNAs Using Digital Droplet J. Vis. Exp.
2022, 187, e64464.
- Sinha T, Mishra SS, Singh S, Panda AC*. PanCircBase: An online resource for the exploration of circular RNAs in pancreatic islets. Cell Dev Biol. 2022, 10:942762.
- Das A, Shyamal S, Sinha T, Mishra SS, Panda AC*. Identification of potential circRNA-microRNA- mRNA regulatory network in skeletal muscle. Mol. Biosci. 2021, 8:762185.
- Khan S, Jha A, Panda AC, Dixit Cancer-associated circRNA-miRNA-mRNA regulatory networks: A meta-analysis. Front. Mol. Biosci. 2021, 8, 671309.
- Das D, Das A, Sahu M, Mishra SS; Khan S, Bejugam PR, Rout PK, Das A, Bano S, Mishra GP, Raghav SK, Dixit A, Panda AC*. Identification and Characterization of Circular Intronic RNAs Derived from Insulin Gene. J. Mol. Sci. 2020, 21(12), 4302
- Pandey PR; Yang JH; Tsitsipatis D; Panda AC; Noh JH; Kim KM; Munk R; Nicholson T; Hanniford D; Argibay D, et al. circSamd4 represses myogenic transcriptional activity of PUR proteins. Nucleic Acids Res 2020, 48, 3789-3805
- Das A; Rout PK; Gorospe M; Panda AC*. Rolling Circle cDNA Synthesis Uncovers Circular RNA Splice variants. J. Mol. Sci. 2019, 20(16), 3988
- Munk R; Martindale JL; Yang X; Yang JH; Grammatikakis I; Di Germanio C; Mitchell SJ; de Cabo R; Lehrmann E; Zhang Y; Becker KG; Raz V; Gorospe M*; Abdelmohsen K; Panda AC*. Loss of miR-451a enhances SPARC production during myogenesis. PLoS One. 2019; 14(3):e0214301.
- Pandey P; Rout PK; Das A; Gorospe M; Panda AC*. RPAD (RNase R Treatment, Polyadenylation, and Poly(A)+ RNA Depletion) Method to Isolate Highly Pure Circular RNA. 2019 Feb 15;155:41-48.
- Panda AC*#, De S#, Grammatikakis I, Munk R, Yang X, Piao Y. Dudekula DB, Abdelmohsen K*, and Gorospe M. High-purity circular RNA isolation method (RPAD) reveals vast collection of intronic circRNAs (IcircRNAs). Nucleic Acids Res. 2017 Jul 7; 45(12): e116.
- Panda AC*#, Grammatikakis I*#, Kim KM, De S, Martindale JL, Munk R, Yang X, Abdelmohsen K, and Gorospe M. Identification of Senescence-Associated Circular RNAs (SAC-RNAs) reveals senescence suppressor CircPVT1. Nucleic Acids Res. 2017 Apr 20;45(7):4021-4035.
- Abdelmohsen K#, Panda AC#, Munk R, Grammatikakis I, Dudekula DB, De S, Kim J, Noh JH, Kim KM, Martindale JL, and Gorospe M. Identification of HuR target circular RNAs uncovers suppression of PABPN1 translation by CircPABPN1. RNA Biology. 2017 Mar 4;14(3):361-369.
- Di Francesco A, Di Germanio C, Panda AC, Huynh P, Peaden R, Navas-Enamorado I, Bastian P, Lehrmann E, Diaz-Ruiz A, Ross D, Siegel D, Martindale JL, Bernier M, Gorospe M, Abdelmohsen K, de Cabo Novel RNA-binding activity of NQO1 promotes SERPINA1 mRNA translation. Free Radic Biol Med. 2016 Aug 8;99:225-233.
- Noh JH, Kim KM, Abdelmohsen K, Yoon JH, Panda AC, Ghosh P, Munk R, Curtis J, Moad CA, Indig FE, Paula WD, Dudekula DB, De S, Yang X, Martindale JL, de Cabo R, and Gorospe HuR and GRSF1 modulate the nuclear export and mitochondrial localization of the lncRNA RMRP. Genes Dev. 2016 May 15;30(10):1224-39.
- Grammatikakis I, Peisu Z, Panda AC, Kim J, Maudsley S, Abdelmohsen K, Yang X, Martindale JL, Motiño O, Hutchison ER, Mattson MP, and Gorospe M. Alternative splicing of neuronal differentiation factor TRF2 regulated by HNRNPH1/H2. Cell Reports. 2016 May 3;15(5):926-934.
- Panda AC*, Abdelmohsen K, Martindale JL, Di Germanio C, Yang X, Grammatikakis I, Noh JH, Zhang Y, Lehrmann E, Dudekula DB, De S, Becker KG, White EJ, Wilson GM, de Cabo R, Gorospe
- Novel RNA-binding activity of MYF5 enhances Ccnd1/Cyclin D1 mRNA translation during myogenesis. Nucleic Acids Res. 2016 Mar 18;44(5):2393-408.
- Dudekula DB#, Panda AC#, Grammatikakis I, De S, Abdelmohsen K, and Gorospe M. CircInteractome: a web tool for exploring circular RNAs and their interacting proteins and microRNAs. RNA Biology, 2016, Jan 2;13(1):34-42.
- Abdelmohsen K#, Panda AC#, De S#, Grammatikakis I, Kim J, Ding J, Noh JH, Kim KM, Mattison JA, de Cabo R, Gorospe M. Circular RNAs in monkey muscle: age-dependent changes. Aging (Albany NY). 2015 Nov; 7(11): 903-910.
- Lee KP, Shin YJ, Panda AC, Abdelmohsen K, Kim JY, Lee SM, Bahn YJ, Choi JY, Kwon ES, Baek SJ, Kim SY, Gorospe M, Kwon KS. miR-431 promotes differentiation and regeneration of old skeletal muscle by targeting Smad4. Genes Dev. 2015 Aug 1;29(15):1605-17.
- Abdelmohsen K, Panda AC, Kang MJ, Guo R, Kim J, Grammatikakis I, Yoon JH, Dudekula DB, Noh JH, Yang X, Martindale JL, Gorospe 7SL RNA represses p53 translation by competing with HuR. Nucleic Acids Res. 2014 Sep;42(15):10099-111.
- Panda AC, Sahu I, Kulkarni SD, Martindale JL, Abdelmohsen K, Vindu A, Joseph J, Gorospe M, Seshadri V. miR-196b-mediated translation regulation of mouse insulin2 via the 5’UTR. PLoS One. 2014 Jul 8;9(7):e101084.
- Panda AC, Abdelmohsen K, Yoon JH, Martindale JL, Yang X, Curtis J, Mercken EM, Chenette DM, Zhang Y, Schneider RJ, Becker KG, de Cabo R, Gorospe M. RNA-binding protein AUF1 promotes myogenesis by regulating MEF2C expression levels. Mol Cell Biol. 2014 Aug;34(16):3106-19.
- Abdelmohsen K, Panda A, Kang MJ, Xu J, Selimyan R, Yoon JH, Martindale JL, De S, Wood WH 3rd, Becker KG, Gorospe M. Senescence-associated lncRNAs: senescence-associated long noncoding RNAs. Aging Cell. 2013 Oct;12(5):890-900.
- Chatterjee S#, Panda AC#, Berwal SK, Sreejith RK, Ritvika C, Seshadri V, Pal JK. Vimentin is a component of a complex that binds to the 5′-UTR of human heme-regulated eIF2α kinase mRNA and regulates its translation. FEBS Lett. 2013 Mar 1;587(5):474-80.
- Kulkarni SD, Muralidharan B, Panda AC, Bakthavachalu B, Vindu A, Seshadri V. Glucose- stimulated translation regulation of insulin by the 5′ UTR-binding proteins. J Biol Chem. 2011 Apr 22;286(16):14146-56.
- Panda AC, Kulkarni SD, Muralidharan B, Bakthavachalu B, Seshadri V. Novel splice variant of mouse insulin2 mRNA: implications for insulin expression. FEBS Lett. 2010 Mar 19;584(6):1169-
Review articles and Methods
- Das, P., Shyamal, S., Bhandari, V., & Panda, A. C. (2026). Antisense oligonucleotide pulldown and silencing of circular RNA Nfix in vivo in neonatal mouse lungs. Current Protocols, 6, e70339. doi: 10.1002/cpz1.70339
- Joshi, V., Swati, Mishra, A., Panda, A. and Sharma, V. The role of circular RNAs in regulating cytokine signaling in cancer. FEBS Open Bio. 2025, 15 (9), 1436-1458
- Sadhukhan S, Sinha T, Dey S, & Panda AC*. Subcellular localization of circular RNAs: Where and why. Biochemical and Biophysical Research Communications, 2024, 715, 149937.
- Singh S, Sinha T, & Panda AC*. Regulation of microRNA by circular RNA.WIREs RNA, 2023, e1820.
- Singh S, Shyamal S, & Panda AC*. Detecting RNA–RNA WIREs RNA, 2022, e1715.
- Sinha T, Panigrahi C, Das D, Panda AC*. Circular RNA translation, a path to hidden proteome.
WIREs RNA, 2021, e1685.
- Das A, Sinha T, Shyamal S, Panda AC*. Emerging Role of Circular RNA–Protein Interactions. Non- Coding RNA, 2021, 7, 48.
- Das D, Das A, Panda AC*. Antisense Oligo Pulldown of Circular RNA for Downstream Analysis. Bio Protocol. 2021 Jul 20; 11(14): e4088.
- Bejugam PR, Das A, Panda AC*. Seeing Is Believing: Visualizing Circular RNAs. Noncoding RNA
2020, 6 (4).
- Das A, Das A, Das D, Abdelmohsen K, Panda AC*. Circular RNAs in Biochim Biophys Acta Gene Regul Mech 2020, 1863 (4), 194372.
- Das D, Das A, Panda AC*. Emerging role of long noncoding RNAs and circular RNAs in pancreatic β cells. Non-coding RNA Investigation. 2018;2:69
- Panda AC* and Gorospe Detection and Analysis of Circular RNAs by RT-PCR. Bio-protocol.
2018 Mar 20; 8(6): e2775.
- Panda AC, Grammatikakis I, Munk R, Gorospe M, Abdelmohsen Emerging roles and context of circular RNAs. Wiley Interdiscip Rev RNA. 2017 Mar: 8(2).
- Panda AC*, Martindale JL, Gorospe M. Polysome Fractionation to Analyze mRNA Distribution Profiles. Bio-Protocol. 2017 Feb 5, Vol 7, Iss 03.
- Panda AC*, Martindale JL, Gorospe M. Affinity Pulldown of Biotinylated RNA for Detection of Protein-RNA Complexes. Bio-Protocol. 2016 Dec 20, Vol 6, Iss 24.
- Grammatikakis I#, Panda AC#, Abdelmohsen K, Gorospe Long noncoding RNAs (lncRNAs) and the molecular hallmarks of aging. Aging (Albany NY). 2014 Dec ;6(12) :992-1009.
- Panda AC, Grammatikakis I, Yoon JH, Abdelmohsen K. Posttranscriptional regulation of insulin family ligands and receptors. Int J Mol Sci. 2013 Sep 18;14(9):19202-29.
Book chapters
- Sinha, T., Sadhukhan, S., Panda, A.C. (2025). Computational Prediction of Gene Regulation by lncRNAs. In: Lai, X., Gupta, S., Vera Gonzalez, J. (eds) Computational Biology of Non-Coding RNA. Methods in Molecular Biology, vol 2883. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-4290-0_15
- Singh, S., Das, A., Panda, A.C. (2024). Sanger Sequencing to Determine the Full-Length Sequence of Circular RNAs. In: Dieterich, C., Baudet, ML. (eds) Circular RNAs. Methods in Molecular Biology, vol 2765. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-3678-7_5
- Sinha T, Shyamal S, Panda AC*. Computational Tools for Functional Analysis of Circular RNAs. RNA Structure and Function. RNA Technologies, Springer, Cham. 2023, vol 14.
- Das A, Das D, Panda AC*. Chapter 11 – Validation of gene expression by quantitative PCR. Translational and Applied Genomics, Rigor and Reproducibility in Genetics and Genomics, Academic Press, 2024, Pages 247-257.
- Das A, Das, D, Panda AC*. Validation of Circular RNAs by PCR. Methods Mol Biol, 2022, 2392, 103-114.
- Panda AC*. Circular RNAs Act as miRNA Sponges. Adv Exp Med 2018; 1087:67-79.
- Panda AC, Dudekula DB, Abdelmohsen K, Gorospe M. Analysis of Circular RNAs Using the Web Tool CircInteractome. Methods in Molecular Biology, vol 1724; 2018 Jan 11.
- Panda AC, Abdelmohsen K, and Gorospe M. SASP Regulation by Noncoding RNA. Mechanism of Aging and Development. 2017 Dec;168:37-43.
- Munk R, Panda AC, Grammatikakis I, Gorospe M and Abdelmohsen K. Senescence-associated miRNAs. International Review of Cell and Molecular Biology. 2017;334:177-205.
- Panda AC, Abdelmohsen K, Gorospe RT-qPCR detection of senescence-associated circular RNAs. Methods in Molecular Biology. 2017; 1534:79-87.
Editorials and Commentaries
- Sinha T, Abdelmohsen K, Panda AC*. Editorial: Volume II: Structural and functional characterization of circular RNAs. Mol. Biosci. 2022, 9:1015990.
- Grammatikakis I, Karreth FA, Panda AC*. (2021) Editorial: Structural and Functional Characterization of Circular RNAs. Mol. Biosci. 2021, 8:795286.
- Das A, Gorospe M, Panda AC*. The coding potential of circRNAs. Aging (Albany NY). 2018 Sep 13; 10(9):2228-2229.
- Panda AC* and Gorospe M. Identifying intronic circRNAs: progress and challenges. Non-coding RNA Investig 2018; 2:34.
Other publications
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Panda AC and Seshadri V. Mus musculus insulin2 precursor (Ins2) mRNA, partial cds, alternatively spliced. Gene Bank # GQ915612.1.
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