
Durg V. Singh, Ph.D.
Scientist
Institute of Life Sciences
Nalco Square
Bhubaneswar-751023, India
Office:
0091 674 2300137/ 2301476 ext. 206
Lab: 0091 674 2300137/ 2301476 ext. 212
Fax: 0091 674 2300728
Email: singhdv@ils.res.in, durg.singh@gmail.com
|
|
Sequence
analysis of Vibrio cholerae orfU and
zot from pre-CTXΦ and CTXΦ reveals multiple
origin of pre-CTXΦ and CTXΦ:
A multiplex PCR was developed to detect pre-CTXΦ
and CTXΦ in V. cholerae. A total of 115
V. cholerae were tested, of which 42
V. cholerae O1 and 18 V. cholerae
O139 contained CTXΦ. Six V. cholerae O139
contained only pre-CTXΦ and three V. cholerae
O1 and 23 V. cholerae O139 contained both
pre-CTXΦ and CTXΦ. None of the V. cholerae
non-O1 and non-O139 that were tested had pre-CTXΦ
or CTXΦ. Results of RFLP analysis revealed the
V. cholerae isolates possessed single or
multiple copies of pre-CTXΦ and CTXΦ, always
proceeded by a tandemly arranged RS1 element.
Comparative nucleotide sequence analyses of the
core region genes, orfU and zot,
of 15 V. cholerae showed pre-CTXETΦ
and CTXETΦ lineage with V.
cholerae El Tor and pre-CTXClassΦ,
pre-CTXCalcΦ, and CTXCalcΦ
with classical V. cholerae O1 and O139.
Two distinct types of ctxB were detected in
V. cholerae O139. MLST of seven V.
cholerae housekeeping genes indicated clonal
origin, irrespective of the presence of pre-CTXΦ
and/or CTXΦ.
Effect of storage and sodium
chloride on excision of CTXФ or pre-CTXФ and
CTXФ from Vibrio cholerae O139 strains:
We examined the effect of storage and sodium
chloride on excision of CTXФ or pre- CTXФ and
CTXФ from Vibrio cholerae O139 strains.
We found that one strain of V. cholerae
O139 VO146P showed loss of the complete phage
array, and other strain VO170P showed partial
loss of the phage array giving rise to altered
strains designated as VO146N and VO170N. Results
of PCR and RFLP analysis revealed that both
strains (VO146P and VO170P) possessed a single
copy of pre-CTXETΦ and two copies of
CTXΦ comprising CTXClassΦ and CTXCalcΦ
arranged in tandem, and integrated in the large
chromosome. The presence of classical ctxB was
detected in CTXCalcΦ of both V.
cholerae O139 strains. Nucleotide sequencing
of three housekeeping genes showed no difference
between parent and altered strains of V.
cholerae O139. |