Publications

• Kinshuk Chandra Nayak. Comparative study on factors influencing the codon and amino acid usage in Lactobacillus sakei 23K and 13 other lactobacilli. Molecular Biology Reports(Springer)2011,DOI: 10.1007/s11033-011-0768-4

• Bijay Misra, Chittaranjan Panda, Haribhakti Seba Das, Kinshuk Chandra Nayak, Shivaram Prasad Singh. STUDY ON AWARENESS ABOUTHEPATITIS B VIRAL INFECTION IN COASTAL EASTERN INDIA.Hepatitis B Annual 2011.6:19-28..(DOI:10.4103/0972-
  9747.76902)

• Gaurav Sablok, Kinshuk Chandra Nayak, Franck Vazquez, Tatiana V.Tatarinova. Synonymous codon usage, GC3 and Evolutionary patterns across plastomes of three pooid model species - Emerging grass genome models for monocots.Molecular Biotechnology. 2011.DOI 10.1007/s12033-011-9383-9

• MHU Turabe Fazil, Sunil Kumar, Rohit Farmer, HP Pandey and DV Singh (2010). Binding efficiencies of carbohydrate ligands with different genotypes of cholera toxin B: Molecular Modeling, dynamics and Docking Simulation studies. Journal of Molecular Modeling (In Press, Springer publication).
• Kinshuk C. Nayak, Mutational bias and Gene expression level shape codon usage in Thermobifidafusca YX. In Silico Biology(2010), 9 : 1-17.
• Biswaranjan Paital, Sunil Kumar*, Rohit Farmer, Niraj Kanti Tripathy, Gagan Bihari Nityananda Chainy (2010) In silico prediction and characterization of 3D structure and binding properties of catalase from the commercially important crab, Scylla serrata. Interdisciplinary Sciences: Computational Life Sciences (Accepted, Springer publication).*corresponding author.
• Chinmayee Mohapatra, Hirak Kumar Barman, Rudra Prasanna Panda, Sunil Kumar, Varsha Das, Ramya Mohanta, Shibani Mohapatra, Pallipuram Jayasankar (2010) Cloning of cDNA and prediction of peptide structure of plzf expressed in the spermatogonial cells of Labeo rohita, Mar. Genomics, doi: 10.1016/j.margen.2010.09.002. (Elsevier publication).
• Babu A. Manjasetty, Sunil Kumar, Andrew P. Turnbull, Niraj Kanti Tripathy (2009). Homology Modeling and Analysis of Human Proteins related to Disease:Structural Investigations into Shwachman-Bodian-Diamond Syndrome (SBDS) using a Bioinformatics Approach,.InterJRI Science and Technology, Vol. 1, Issue 2,97-104
• MHU Turabe Fazil*, Sunil Kumar*, N Subbarao, H P Pandey and Durg V. Singh (2009) Homology Modeling of a Sensor Histidine Kinase from Aeromonas hydrophila. Journal of Molecular Modeling DOI 10.1007/s00894-009-0602-2. * Equal contribution.
• Sunil Kumar, B B Sahu, N K Tripathy, B P Shaw (2009) In Silico Identification of Putative Proton Binding Sites of a Plasma Membrane H⁺-ATPase Isoform of Arabidopsis Thaliana, AHA1. J Proteomics Bioinform 2: 349-359. doi:10.4172/jpb.1000095

• Sunil Kumar, N. Subbarao , Sushmita Sahu, Mamata Ray, Priyanka Das, Prosenjit Mondal, Surendra Chandra Sabat (2009). In silico Modeling of Rice CatalaseA and Docking studies with Sucrose. Poster presented at International conference on Bioinformatics (InCoB), Singapore during 7-11 Sept., 2009.

• Fazil MHU Turabe, Kumar Sunil , Singh DV (2009). In Silico Structural Analysis Of Vibrio Cholerae Luxp: Modelling, Docking And Molecular Dynamics Simulations Studies. Indo-US Conference on Infectious Disease, TIFR Mumbai, 5-8 January, 2010

• Sunil Kumar, Priya R Debata, Prakash C Supakar (2008) Prediction of 3-dimensional structure of   cathepsin L protein of Rattus norvegicus. J Proteomics Bioinform 1: 307-314.
• Sunil kumar, Binod Bihari Sahu and B P Shaw (2007). Comparative modeling of protein of Plasma membrane H+ ATPase of Sesuvium portulacastrum. Poster presented at Internationa Conference on New Horizons in Biotechnology (NHBT -2007), NIIST, Trivendrum, India from November 26-29, 2007, Poster No.  FAB-059.
• Sunil kumar (2006). A computational Identification of novel Cathepsin L like proteins in Drosophila melanogaster genome. Poster presented at 6^th International conference in Bioinformatics (InCoB 2006) organized by DBT, JNU and IIT Delhi at Hotel Ashoka New Delhi from December 18-20, 2006, Poster No. 64.
• Vikash kumar and Sunil kumar (2004), A Rapid peptide based Alignment -free method to construct Genome trees Independent of sequence annotation. Poster presented at The 15^th International Conference on Genome Informatics. "Posters and Software Demonstrations" (GIW 2004) organized by Japanese Society for Bioinformatics, Yokohama, Japan   December 13-15, Pos. No. 152.
• Sunil kumar, Swati Nayak, Snehasish Parhi and P.C.Supakar (2003), Comparative Protein Structure Modeling. Bioinformatics India. 1(3). 11-16.
• Pagadala Nataraj Sekhar, Polavarapu B. Kavi Kishor, Lakkireddy Ananda Reddy, Prosenjit Mondal, Ardhendu K. Dash, Manoranjan Kar, Satya S. Mohanty and Surendra C. Sabat In silico modeling and hydrogen peroxide binding study of rice catalase In Silico Biology 2006; 6: 0041
• Shachindra K. Pandey, Kunwar Digvijay Narayan, Saumya Bandyopadhyay, Kinshuk C. Nayak and Subrata K. Das^*. 2009. Thiosulfate oxidation by Comamonas  sp. S23 isolated from a sulfur spring.  Curr Microbiol. 2009 58(5):516-21
   
• Sujogya K. Panda, V. Jyoti, Bhaskar Bhadra,  Kinshuk C. Nayak, Sisinthy Shivaji, Fred A. Rainey and Subrata K. Das^*. 2009.  Thiomonas bhubaneswarensis sp. nov., a novel obligately mixotrophic, moderately thermophilic, thiosulfate oxidizing bacterium. International Journal of Systematic and Evolutionary Microiology. 59: 2171-2175
   

 Book Chapter: 

• Sunil Kumar. Solvent Accessibility of proteins. In Bioinformatics and Statistics in Fishries Research, 2006, Vol-III P 42-49 Published by Central Institute of Fishries and Aquaculture, Kausalyanagar, Bhubaneswar.
• Sunil Kumar. Basics in Bioinformatics. In Bioinformatics and Statistics in Fishries Research, 2005, Vol-II P 10-21 Published by Central Institute of Fishries and Aquaculture, Kausalyanagar, Bhubaneswar.